MakeStrandless

Data Stream Processing > Processing Modules > General manipulation Modules

Description

The MakeStrandless processing module processes Features on the data stream and removes their strand information to make them strandless. Useful when the data are alignments (which inherently are stranded), but the experimental sample protocol is actually strandless in nature and the strand information present in the alignment is meaningless.

Parameters

This module has no parameters

Example

Simple script...

<zenbu_script>
   <stream_processing>
		<spstream module="MakeStrandless"/>

		<spstream module="TemplateCluster">
			<overlap_mode>height</overlap_mode>
			<expression_mode>sum</expression_mode>
			<overlap_subfeatures>true</overlap_subfeatures>
			<ignore_strand>true</ignore_strand>
			<side_stream>
				<spstream module="FeatureEmitter">
					<fixed_grid>true</fixed_grid>
					<both_strands>false</both_strands>
				</spstream>
			</side_stream>
		</spstream>
   </stream_processing>
</zenbu_script>