Case Studies Gallery

Organized by Next-Genereration Sequencing protocol

• shortRNA-seq processing and visualization cases cases studies
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  sRNA visualization
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  mirBase mir expression
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  finding de novo mir loci
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  finding potential mirton

• CAGE processing and visualization cases studies
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  transcript proximal promoter with multimapping reads only
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  CAGE-based transcript expression
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  CAGE-based repeat element expression

• RNA-seq processing and visualization cases studies
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  transcript expression
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  intron support from reads
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  splice donor/acceptor usage
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  Loading/Vizualizing EdgeR computed differential expression

• Chip-seq processing and visualization cases studies
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  Chip-Seq visualization
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  finding TF target gene
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  de novo TFBS clustering

Expression collation (transcript, repeat element, TFBS)

• Signal filtering cases studies
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  Chip-Seq visualization
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  finding TF target gene
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  de novo TFBS clustering

• Obtaining transcript expression levels cases studies
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  CAGE-based
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  RNAseq-based
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  User and Collaboration systems

• Signal filtering cases studies
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  ZENBU Genome Browser
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  Data Explorer (DEX)
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  User and Collaboration systems