Difference between revisions of "MakeStrandless"

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(Example)
(Description)
 
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==Description==
 
==Description==
The '''MakeStrandless''' [[DataProcessing#Processing_modules|processing module]] processes [[DataModel#Feature|'''Features''']] on the data stream and removes their strand information to make them strandlass. Useful when the original data might be alignments which shows alignment strand, but the experimental sample protocol is actually strandless in nature and thus the strand in the alignment is meaningless.
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The '''MakeStrandless''' [[DataProcessing#Processing_modules|processing module]] processes [[DataModel#Feature|'''Features''']] on the data stream and removes their strand information to make them strandless. Useful when the data are alignments (which inherently are stranded), but the experimental sample protocol is actually strandless in nature and the strand information present in the alignment is meaningless.
  
 
==Parameters==
 
==Parameters==

Latest revision as of 17:12, 6 June 2013

Data Stream Processing > Processing Modules > General manipulation Modules

Description

The MakeStrandless processing module processes Features on the data stream and removes their strand information to make them strandless. Useful when the data are alignments (which inherently are stranded), but the experimental sample protocol is actually strandless in nature and the strand information present in the alignment is meaningless.

Parameters

This module has no parameters

Example

Simple script...

<zenbu_script>
   <stream_processing>
		<spstream module="MakeStrandless"/>

		<spstream module="TemplateCluster">
			<overlap_mode>height</overlap_mode>
			<expression_mode>sum</expression_mode>
			<overlap_subfeatures>true</overlap_subfeatures>
			<ignore_strand>true</ignore_strand>
			<side_stream>
				<spstream module="FeatureEmitter">
					<fixed_grid>true</fixed_grid>
					<both_strands>false</both_strands>
				</spstream>
			</side_stream>
		</spstream>
   </stream_processing>
</zenbu_script>