Difference between revisions of "MakeStrandless"

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(Example)
(Example)
Line 27: Line 27:
 
<side_stream>
 
<side_stream>
 
<spstream module="FeatureEmitter">
 
<spstream module="FeatureEmitter">
<num_per_region>970</num_per_region>
 
 
<fixed_grid>true</fixed_grid>
 
<fixed_grid>true</fixed_grid>
 
<both_strands>false</both_strands>
 
<both_strands>false</both_strands>

Revision as of 17:10, 6 June 2013

Data Stream Processing > Processing Modules > General manipulation Modules

Description

The MakeStrandless processing module processes Features on the data stream and removes their strand information to make them strandlass. Useful when the original data might be alignments which shows alignment strand, but the experimental sample protocol is actually strandless in nature and thus the strand in the alignment is meaningless.

Parameters

This module has no parameters

Example

Simple script...

<zenbu_script>
   <stream_processing>
		<spstream module="MakeStrandless"/>

		<spstream module="TemplateCluster">
			<overlap_mode>height</overlap_mode>
			<expression_mode>sum</expression_mode>
			<overlap_subfeatures>true</overlap_subfeatures>
			<ignore_strand>true</ignore_strand>
			<side_stream>
				<spstream module="FeatureEmitter">
					<fixed_grid>true</fixed_grid>
					<both_strands>false</both_strands>
				</spstream>
			</side_stream>
		</spstream>
   </stream_processing>
</zenbu_script>