Case Studies Gallery

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Contents

1 Most common visualizations
2 Organized by Next-Genereration Sequencing protocol
3 Organized by Processing Module
4 Signal filtering
5 Signal filtering
6 Expression collation (transcript, repeat element, Chip-Seq)

Most common visualizations

Organized by Next-Genereration Sequencing protocol

shortRNA-seq processing and visualization cases cases studies
sRNA visualization
mirBase mir expression
finding de novo mir loci
finding potential mirton

CAGE processing and visualization cases studies
transcript proximal promoter with multimapping reads only
CAGE-based transcript expression
CAGE-based repeat element expression

RNA-seq processing and visualization cases studies
transcript expression
intron support from reads
splice donor/acceptor usage
Loading/Vizualizing EdgeR computed differential expression

Chip-seq processing and visualization cases studies
Chip-Seq visualization
finding TF target gene
de novo TFBS clustering

Organized by Processing Module

Signal filtering

Signal filtering

Expression collation (transcript, repeat element, Chip-Seq)

Obtaining transcript expression levels cases studies
CAGE-based
RNAseq-based
User and Collaboration systems

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