Case Studies Gallery

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Gallery of cases studies organize by NGS approaches

Next-Genereration Sequencing protocol

CAGE processing and visualization cases studies
transcript proximal promoter with multimapping reads only
CAGE-based transcript expression
CAGE-based repeat element expression

RNA-seq processing and visualization cases studies
transcript expression
intron support from reads
splice donor/acceptor usage
Loading/Vizualizing EdgeR computed differential expression

shortRNA-seq processing and visualization cases cases studies
sRNA visualization
mirBase mir expression
finding de novo mir loci
finding potential mirton

Chip-seq processing and visualization cases studies
Chip-Seq visualization
finding TF target gene
de novo TFBS clustering

Processing

Obtaining transcript expression levels cases studies
CAGE-based
RNAseq-based
User and Collaboration systems

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